The Brain Tumor Segmentation - Metastases (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI.

Journal: ArXiv
Published:
Abstract

The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and benchmarking algorithms using rigorously annotated internationally compiled real-world datasets. This study presents the results of the segmentation challenge and characterizes the challenging cases that impacted the performance of the winning algorithms. Untreated brain metastases on standard anatomic MRI sequences (T1, T2, FLAIR, T1PG) from eight contributed international datasets were annotated in stepwise method: published UNET algorithms, student, neuroradiologist, final approver neuroradiologist. Segmentations were ranked based on lesion-wise Dice and Hausdorff distance (HD95) scores. False positives (FP) and false negatives (FN) were rigorously penalized, receiving a score of 0 for Dice and a fixed penalty of 374 for HD95. The mean scores for the teams were calculated. Eight datasets comprising 1303 studies were annotated, with 402 studies (3076 lesions) released on Synapse as publicly available datasets to challenge competitors. Additionally, 31 studies (139 lesions) were held out for validation, and 59 studies (218 lesions) were used for testing. Segmentation accuracy was measured as rank across subjects, with the winning team achieving a LesionWise mean score of 7.9. The Dice score for the winning team was 0.65 ± 0.25. Common errors among the leading teams included false negatives for small lesions and misregistration of masks in space. The Dice scores and lesion detection rates of all algorithms diminished with decreasing tumor size, particularly for tumors smaller than 100 mm3. In conclusion, algorithms for BM segmentation require further refinement to balance high sensitivity in lesion detection with the minimization of false positives and negatives. The BraTS-METS 2023 challenge successfully curated well-annotated, diverse datasets and identified common errors, facilitating the translation of BM segmentation across varied clinical environments and providing personalized volumetric reports to patients undergoing BM treatment.

Authors
Ahmed Moawad, Anastasia Janas, Ujjwal Baid, Divya Ramakrishnan, Rachit Saluja, Nader Ashraf, Nazanin Maleki, Leon Jekel, Nikolay Yordanov, Pascal Fehringer, Athanasios Gkampenis, Raisa Amiruddin, Amirreza Manteghinejad, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Sanjay Aneja, Syed Anwar, Timothy Bergquist, Veronica Chiang, Verena Chung, Gian Conte, Farouk Dako, James Eddy, Ivan Ezhov, Nastaran Khalili, Keyvan Farahani, Juan Iglesias, Zhifan Jiang, Elaine Johanson, Anahita Kazerooni, Florian Kofler, Kiril Krantchev, Dominic Labella, Koen Van Leemput, Hongwei Li, Marius Linguraru, Xinyang Liu, Zeke Meier, Bjoern Menze, Harrison Moy, Klara Osenberg, Marie Piraud, Zachary Reitman, Russell Shinohara, Chunhao Wang, Benedikt Wiestler, Walter Wiggins, Umber Shafique, Klara Willms, Arman Avesta, Khaled Bousabarah, Satrajit Chakrabarty, Nicolo Gennaro, Wolfgang Holler, Manpreet Kaur, Pamela Lamontagne, Mingde Lin, Jan Lost, Daniel Marcus, Ryan Maresca, Sarah Merkaj, Gabriel Cassinelli Pedersen, Marc Von Reppert, Aristeidis Sotiras, Oleg Teytelboym, Niklas Tillmans, Malte Westerhoff, Ayda Youssef, Devon Godfrey, Scott Floyd, Andreas Rauschecker, Javier Villanueva Meyer, Irada Pflüger, Jaeyoung Cho, Martin Bendszus, Gianluca Brugnara, Justin Cramer, Gloria J Perez Carillo, Derek Johnson, Anthony Kam, Benjamin Yin Kwan, Lillian Lai, Neil Lall, Fatima Memon, Mark Krycia, Satya Patro, Bojan Petrovic, Tiffany So, Gerard Thompson, Lei Wu, E Schrickel, Anu Bansal, Frederik Barkhof, Cristina Besada, Sammy Chu, Jason Druzgal, Alexandru Dusoi, Luciano Farage, Fabricio Feltrin, Amy Fong, Steve Fung, R Gray, Ichiro Ikuta, Michael Iv, Alida Postma, Amit Mahajan, David Joyner, Chase Krumpelman, Laurent Letourneau Guillon, Christie Lincoln, Mate Maros, Elka Miller, Fanny Esther Morón, Esther Nimchinsky, Ozkan Ozsarlak, Uresh Patel, Saurabh Rohatgi, Atin Saha, Anousheh Sayah, Eric Schwartz, Robert Shih, Mark Shiroishi, Juan Small, Manoj Tanwar, Jewels Valerie, Brent Weinberg, Matthew White, Robert Young, Vahe Zohrabian, Aynur Azizova, Melanie Maria Brüßeler, Mohanad Ghonim, Mohamed Ghonim, Abdullah Okar, Luca Pasquini, Yasaman Sharifi, Gagandeep Singh, Nico Sollmann, Theodora Soumala, Mahsa Taherzadeh, Philipp Vollmuth, Martha Foltyn Dumitru, Ajay Malhotra, Aly Abayazeed, Francesco Dellepiane, Philipp Lohmann, Víctor Pérez García, Hesham Elhalawani, Maria De Verdier, Sanaria Al Rubaiey, Rui Armindo, Kholod Ashraf, Moamen Asla, Mohamed Badawy, Jeroen Bisschop, Nima Lomer, Jan Bukatz, Jim Chen, Petra Cimflova, Felix Corr, Alexis Crawley, Lisa Deptula, Tasneem Elakhdar, Islam Shawali, Shahriar Faghani, Alexandra Frick, Vaibhav Gulati, Muhammad Haider, Fátima Hierro, Rasmus Dahl, Sarah Jacobs, Kuang-chun Hsieh, Sedat Kandemirli, Katharina Kersting, Laura Kida, Sofia Kollia, Ioannis Koukoulithras, Xiao Li, Ahmed Abouelatta, Aya Mansour, Ruxandra-catrinel Maria Zamfirescu, Marcela Marsiglia, Yohana Mateo Camacho, Mark Mcarthur, Olivia Mcdonnell, Maire Mchugh, Mana Moassefi, Samah Morsi, Alexander Munteanu, Khanak Nandolia, Syed Naqvi, Yalda Nikanpour, Mostafa Alnoury, Abdullah Mohamed Nouh, Francesca Pappafava, Markand Patel, Samantha Petrucci, Eric Rawie, Scott Raymond, Borna Roohani, Sadeq Sabouhi, Laura Sanchez Garcia, Zoe Shaked, Pokhraj Suthar, Talissa Altes, Edvin Isufi, Yaseen Dhemesh, Jaime Gass, Jonathan Thacker, Abdul Tarabishy, Benjamin Turner, Sebastiano Vacca, George Vilanilam, Daniel Warren, David Weiss, Fikadu Worede, Sara Yousry, Wondwossen Lerebo, Alejandro Aristizabal, Alexandros Karargyris, Hasan Kassem, Sarthak Pati, Micah Sheller, Katherine E Link, Evan Calabrese, Nourel Tahon, Ayman Nada, Yuri Velichko, Spyridon Bakas, Jeffrey Rudie, Mariam Aboian
Relevant Conditions

Brain Tumor